Genetics and Rare Diseases Area
Mitochondrial DNA Maintenance Disorders Lab
Research Activity
Mitochondria are key organelles as they are responsible for supplying the proper form of energy necessary to the cell to exert all its functions. Unlike other cellular organelles, mitochondria possess their own DNA (mtDNA). In humans, the mitochondrial genome is comprised of several copies of a 16 kilobases (kb), double strand DNA (dsDNA) circular molecule. The genes encoded by this small genome are essential for the biosynthesis of the mitochondrial respiratory chain.
The maintenance of mtDNA requires a set of nuclear genes involved in mtDNA replication, in controlling the mitochondrial nucleotide pools, and in mediating mitochondrial fusion and fission. Mutations in these genes are associated with several pathological conditions, hereby referred to as mtDNA maintenance defects (MDMD). Patients with MDMD presents with different phenotypic manifestations, including neuropathy, myopathy, hepatopathy and encephalopathy. The most severe conditions, characterized by depletion of mtDNA (i.e. the reduction of mtDNA copy number in cells), manifest during the neonatal period or early infancy. Although in the majority of the cases the genetic cause triggering the disease is known, the mechanistic process linking the genetic defect to the loss of mtDNA integrity is still poorly understood. Nonetheless, we recently showed that specific DNA secondary structures, called G-quadruplexes (G4s), can form at the mtDNA and interfere with the process of replication leading to mtDNA instability (Doimo et al, 2023).
Our recently established group aims at elucidating the molecular mechanisms regulating the maintenance of the mitochondrial genome and particularly how DNA secondary structures and epigenetic modifications impact these processes.
We are developing novel genomic, proteomic and single molecules methodologies and apply them in cell models and patient’s derived tissues. In addition, we are establishing in vivo models of disease that will allow us to explore therapies that can counteract the mtDNA genomic instability and block the progression of the disease.
Team Members
Dr. Mara Doimo – Junior Principal Investigator
Dr. Ilaria Cestonaro – Research Fellow
Dr. Caterina Giovine – Research Fellow
Selected Publications
- Doimo M #, Chaudhari N, Abrahamsson S, L’Hôte V, Nguyen TVH, Berner A, Ndi M, Abrahamsson A, Das RN, Aasumets K, Goffart S, Pohjoismäki JLO, López MD, Chorell E, Wanrooij S. # Enhanced mitochondrial G-quadruplex formation impedes replication fork progression leading to mtDNA loss in human cells. Nucleic Acids Res. 2023 Aug 11;51(14):7392-7408. PMID:37351621
- Prasad B*, Doimo M*, Andréasson M, L’Hôte V, Chorell E, Wanrooij S. A complementary chemical probe approach towards customized studies of G-quadruplex DNA structures in live cells. Chem Sci. 2022 Feb 1;13(8):2347-2354. doi: 10.1039/d1sc05816a. eCollection 2022 Feb 23. PMID: 35310480
- Jamroskovic J*, Doimo M*, Chand K, Obi I, Kumar R, Brännström K, Hedenström M, Nath Das R, Akhunzianov A, Deiana M, Kasho K, Sulis Sato S, Pourbozorgi PL, Mason JE, Medini P, Öhlund D, Wanrooij S, Chorell E, Sabouri N. Quinazoline Ligands Induce Cancer Cell Death through Selective STAT3 Inhibition and G-Quadruplex Stabilization. J Am Chem Soc. 2020 Feb 12;142(6):2876-2888. doi: 10.1021/jacs.9b11232. Epub 2020 Jan 28. PMID: 31990532
- Berner A, Das RN, Bhuma N, Golebiewska J, Abrahamsson A, Andréasson M, Chaudhari N, Doimo M, Bose PP, Chand K, Strömberg R, Wanrooij S, Chorell E.G4-Ligand-Conjugated Oligonucleotides Mediate Selective Binding and Stabilization of Individual G4 DNA Structures. J Am Chem Soc. 2024 Mar 13;146(10):6926-6935. doi: 10.1021/jacs.3c14408. Epub 2024 Mar 2. PMID: 38430200
- Doimo M, Pfeiffer A, Wanrooij PH, Wanrooij S. Chapter 1 – mtDNA replication, maintenance, and nucleoid organization. In: The Human Mitochondrial Genome. Editor(s): Giuseppe Gasparre, Anna Maria Porcelli. Academic Press. 2020. Pages 3-33